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AIMS Microbiology

AIMS Microbiology is an international Open Access journal devoted to publishing peer-reviewed, high quality, original papers in the field of microbiology. We publish the following article types: original research articles, reviews, editorials, letters, and conference reports.

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Research article
Human Papillomavirus Vaccine immune responses in an Olive baboon model is not compromised by chronic Schistosoma mansoni infections
Linda Obiero,  Edinah Songoro,  Martin Omondi,  Ruth Nyakundi,  Lucy Ochola
2025, Volume 11, Issue 3: 720-736. doi: 10.3934/microbiol.2025030
Abstract HTML PDF Viewed (63)
Review
Applications of solid-state fermented (SSF) diets to improve the growth, organ health, immunity and disease resistance through modulating the transcriptomics and proteomics profile in fish and shrimp
Shishir Kumar Nandi,  Sanchita Sarkar,  Md. Toasin Hossain Aunkor,  Zulhisyam Abdul Kari,  Tanwi Dey,  Hien Van Doan,  El-Sayed Hemdan Eissa,  Mohamad Nor Azra,  Muhammad A.B. Siddik,  Muhammad Anamul Kabir
2025, Volume 11, Issue 3: 699-719. doi: 10.3934/microbiol.2025029
Abstract HTML PDF Viewed (351)

Research article Special Issue
Degradability, rumen fermentation, and rumen microbiota of livestock rations containing different levels of Azolla pinnata
Ahmed. F.A. Abd-Elgwad,  Salah Abo Bakr,  Ebrahim A. Sabra,  Eman A. Elwakeel,  Mahmoud. M. Khorshed,  Hamdy. M. Metwally,  Alaa Emara Rabee
2025, Volume 11, Issue 3: 679-698. doi: 10.3934/microbiol.2025028
Abstract HTML PDF Viewed (159)
Review
The emerging role of probiotics in the management and treatment of diabetic foot ulcer: a comprehensive review
Abrar Hussain,  Naheed Mojgani,  Syed Muhammad Ali Shah,  Nazia Kousar,  Syed Abid Ali
2025, Volume 11, Issue 3: 649-678. doi: 10.3934/microbiol.2025027
Abstract HTML PDF Viewed (283)

Review
Probiotics: A multifaceted approach to health promotion-from disease prevention to food enrichment and delivery systems
Srirengaraj Vijayaram,  Vivekanandan K.E,  Sabariswaran Kandasamy,  Hary Razafindralambo,  Einar Ringø,  Yun-Zhang Sun,  Gayathri Kaliyannan
2025, Volume 11, Issue 3: 602-648. doi: 10.3934/microbiol.2025026
Abstract HTML PDF Viewed (396)
Research article
Hospital acquired infections in Intensive Care Unit: A study on incidence, antibiotic resistance profile and outcome of the patients in a tertiary care unit in Eastern India
Mandira Chakraborty,  Sayani Sardar,  Debasish Ghosh,  Biyanka Sau,  Maria Teresa Mascellino,  Arkit Ghoshal,  Aniket Rout,  Silpak Biswas,  Anita Nandi Mitra
2025, Volume 11, Issue 3: 588-601. doi: 10.3934/microbiol.2025025
Abstract HTML PDF Viewed (269)

Research article
Whole-Genome analysis of Bacillus subtilis NRCB002 and characterization of its metabolite acetoin as a plant growth stimulant
Yu Song,  Rongjun Yin,  Hui Shen,  Xin Tao,  Linmei Li,  Nan Gao
2025, Volume 11, Issue 3: 574-587. doi: 10.3934/microbiol.2025024
Abstract HTML PDF Viewed (269)
Review
Screening strategies and production of biosurfactants (BSs)/bioemulsifiers (BEs) from marine yeasts and fungi
Surekha K. Satpute,  Ibrahim M. Banat,  Samadhan R. Waghmode,  Shrikant Hulkane,  Mahima Bagayatkar,  Riddhi Chakraborty
2025, Volume 11, Issue 3: 542-573. doi: 10.3934/microbiol.2025023
Abstract HTML PDF Viewed (337)

Review Special Issue
Probiotics, gut microbiota, and brain health: Exploring therapeutic pathways
Srirengaraj Vijayaram,  Karthikeyan Mahendran,  Hary Razafindralambo,  Einar Ringø,  Suruli Kannan,  Yun-Zhang Sun
2025, Volume 11, Issue 3: 501-541. doi: 10.3934/microbiol.2025022
Abstract HTML PDF Viewed (736)
Mini review
Beyond enzymes and organic acids, solid-state fermentation as an alternative for valorizing fruits and vegetable wastes into novel bio-products in a circular economy: A critical review
Ramesh C. Ray,  Sudhanshu S. Behera,  Omojola Awogbemi,  Balwinder Singh Sooch,  Hrudayanath Thatoi,  Subhashree Rath,  Noé Aguilar-Rivera
2025, Volume 11, Issue 2: 462-500. doi: 10.3934/microbiol.2025021
Abstract HTML PDF Viewed (491)

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Review
Probiotics, gut microbiota, and brain health: Exploring therapeutic pathways
Srirengaraj Vijayaram,  Karthikeyan Mahendran,  Hary Razafindralambo,  Einar Ringø,  Suruli Kannan,  Yun-Zhang Sun
2025, Volume 11, Issue 3: 501-541. doi: 10.3934/microbiol.2025022
Abstract HTML PDF Viewed (736)
Review
Screening strategies and production of biosurfactants (BSs)/bioemulsifiers (BEs) from marine yeasts and fungi
Surekha K. Satpute,  Ibrahim M. Banat,  Samadhan R. Waghmode,  Shrikant Hulkane,  Mahima Bagayatkar,  Riddhi Chakraborty
2025, Volume 11, Issue 3: 542-573. doi: 10.3934/microbiol.2025023
Abstract HTML PDF Viewed (337)

Research article
Whole-Genome analysis of Bacillus subtilis NRCB002 and characterization of its metabolite acetoin as a plant growth stimulant
Yu Song,  Rongjun Yin,  Hui Shen,  Xin Tao,  Linmei Li,  Nan Gao
2025, Volume 11, Issue 3: 574-587. doi: 10.3934/microbiol.2025024
Abstract HTML PDF Viewed (269)
Research article
Hospital acquired infections in Intensive Care Unit: A study on incidence, antibiotic resistance profile and outcome of the patients in a tertiary care unit in Eastern India
Mandira Chakraborty,  Sayani Sardar,  Debasish Ghosh,  Biyanka Sau,  Maria Teresa Mascellino,  Arkit Ghoshal,  Aniket Rout,  Silpak Biswas,  Anita Nandi Mitra
2025, Volume 11, Issue 3: 588-601. doi: 10.3934/microbiol.2025025
Abstract HTML PDF Viewed (269)

Review
Probiotics: A multifaceted approach to health promotion-from disease prevention to food enrichment and delivery systems
Srirengaraj Vijayaram,  Vivekanandan K.E,  Sabariswaran Kandasamy,  Hary Razafindralambo,  Einar Ringø,  Yun-Zhang Sun,  Gayathri Kaliyannan
2025, Volume 11, Issue 3: 602-648. doi: 10.3934/microbiol.2025026
Abstract HTML PDF Viewed (396)
Review
The emerging role of probiotics in the management and treatment of diabetic foot ulcer: a comprehensive review
Abrar Hussain,  Naheed Mojgani,  Syed Muhammad Ali Shah,  Nazia Kousar,  Syed Abid Ali
2025, Volume 11, Issue 3: 649-678. doi: 10.3934/microbiol.2025027
Abstract HTML PDF Viewed (283)

Research article
Degradability, rumen fermentation, and rumen microbiota of livestock rations containing different levels of Azolla pinnata
Ahmed. F.A. Abd-Elgwad,  Salah Abo Bakr,  Ebrahim A. Sabra,  Eman A. Elwakeel,  Mahmoud. M. Khorshed,  Hamdy. M. Metwally,  Alaa Emara Rabee
2025, Volume 11, Issue 3: 679-698. doi: 10.3934/microbiol.2025028
Abstract HTML PDF Viewed (159)
Review
Applications of solid-state fermented (SSF) diets to improve the growth, organ health, immunity and disease resistance through modulating the transcriptomics and proteomics profile in fish and shrimp
Shishir Kumar Nandi,  Sanchita Sarkar,  Md. Toasin Hossain Aunkor,  Zulhisyam Abdul Kari,  Tanwi Dey,  Hien Van Doan,  El-Sayed Hemdan Eissa,  Mohamad Nor Azra,  Muhammad A.B. Siddik,  Muhammad Anamul Kabir
2025, Volume 11, Issue 3: 699-719. doi: 10.3934/microbiol.2025029
Abstract HTML PDF Viewed (351)

Research article
Human Papillomavirus Vaccine immune responses in an Olive baboon model is not compromised by chronic Schistosoma mansoni infections
Linda Obiero,  Edinah Songoro,  Martin Omondi,  Ruth Nyakundi,  Lucy Ochola
2025, Volume 11, Issue 3: 720-736. doi: 10.3934/microbiol.2025030
Abstract HTML PDF Viewed (63)
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Review
Antioxidant and anti-inflammatory properties of water kefir microbiota and its bioactive metabolites for health promoting bio-functional products and applications
Dimitra Papadopoulou,  Vasiliki Chrysikopoulou,  Aikaterini Rampaouni,  Alexandros Tsoupras
2024, Volume 10, Issue 4: 756-811. doi: 10.3934/microbiol.2024034
Abstract HTML PDF Cited (5) Viewed (4512)
Review
Microbes' role in environmental pollution and remediation: a bioeconomy focus approach
Giuseppe Maglione,  Paola Zinno,  Alessia Tropea,  Cassamo U. Mussagy,  Laurent Dufossé,  Daniele Giuffrida,  Alice Mondello
2024, Volume 10, Issue 3: 723-755. doi: 10.3934/microbiol.2024033
Abstract HTML PDF Cited (13) Viewed (4030)

Review
Type I CRISPR-Cas-mediated microbial gene editing and regulation
Zeling Xu,  Shuzhen Chen,  Weiyan Wu,  Yongqi Wen,  Huiluo Cao
2023, Volume 9, Issue 4: 780-800. doi: 10.3934/microbiol.2023040
Abstract HTML PDF Cited (5) Viewed (3567)
Review
What we need to know about the germ-free animal models
Fatemeh Aghighi,  Mahmoud Salami
2024, Volume 10, Issue 1: 107-147. doi: 10.3934/microbiol.2024007
Abstract HTML PDF Cited (7) Viewed (3404)

Research article
Genomic characterization of a multidrug-resistant uropathogenic Escherichia coli and evaluation of Echeveria plant extracts as antibacterials
Ana M. Castañeda-Meléndrez,  José A. Magaña-Lizárraga,  Marcela Martínez-Valenzuela,  Aldo F. Clemente-Soto,  Patricia C. García-Cervantes,  Francisco Delgado-Vargas,  Rodolfo Bernal-Reynaga
2024, Volume 10, Issue 1: 41-61. doi: 10.3934/microbiol.2024003
Abstract HTML PDF Viewed (3300)
Research article
Extracellular enzymes producing yeasts study: cost-effective production of α-amylase by a newly isolated thermophilic yeast Geotrichum candidum PO27
Ibtissem Chaib,  Scheherazed Dakhmouche-Djekrif,  Leila Bennamoun,  Tahar Nouadri
2024, Volume 10, Issue 1: 83-106. doi: 10.3934/microbiol.2024006
Abstract HTML PDF Cited (5) Viewed (3171)

Research article
Diversity and antimicrobial activity of the tropical ant-derived actinomycetes isolated from Thailand
Tuangrat Tunvongvinis,  Weeyawat Jaitrong,  Yudthana Samung,  Somboon Tanasupawat,  Wongsakorn Phongsopitanun
2024, Volume 10, Issue 1: 68-82. doi: 10.3934/microbiol.2024005
Abstract HTML PDF Cited (3) Viewed (3057)
Review
A review: Marine aquaculture impacts marine microbial communities
Xiao Zhang,  Jia Hua,  Zule Song,  Kejun Li
2024, Volume 10, Issue 2: 239-254. doi: 10.3934/microbiol.2024012
Abstract HTML PDF Cited (5) Viewed (2973)

Review
Microbial feed additives in ruminant feeding
Ahmed E. Kholif,  Anuoluwapo Anele,  Uchenna Y. Anele
2024, Volume 10, Issue 3: 542-571. doi: 10.3934/microbiol.2024026
Abstract HTML PDF Cited (8) Viewed (2971)
Research article
Seroprevalence of brucellosis among animal handlers in West Bengal, India: an occupational health study
Dolanchampa Modak,  Silpak Biswas,  Agnibho Mondal,  Malabika Biswas,  Maria Teresa Mascellino,  Banya Chakraborty,  Simmi Tiwari,  Ajit Dadaji Shewale,  Tushar Nale,  Rupali Dey
2024, Volume 10, Issue 1: 1-11. doi: 10.3934/microbiol.2024001
Abstract HTML PDF Cited (3) Viewed (2964)

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Review
An overview of the antimicrobial resistance mechanisms of bacteria
Wanda C Reygaert
2018, Volume 4, Issue 3: 482-501. doi: 10.3934/microbiol.2018.3.482
Abstract HTML PDF Cited (1253) Viewed (54996)
Review
Foodborne pathogens
Thomas Bintsis
2017, Volume 3, Issue 3: 529-563. doi: 10.3934/microbiol.2017.3.529
Abstract HTML PDF Cited (655) Viewed (37092)

Review
Saccharomyces cerevisiae and its industrial applications
Maria Parapouli,  Anastasios Vasileiadis,  Amalia-Sofia Afendra,  Efstathios Hatziloukas
2020, Volume 6, Issue 1: 1-31. doi: 10.3934/microbiol.2020001
Abstract HTML PDF Cited (426) Viewed (32744)
Review
Lactic acid bacteria as starter cultures: An update in their metabolism and genetics
Thomas Bintsis
2018, Volume 4, Issue 4: 665-684. doi: 10.3934/microbiol.2018.4.665
Abstract HTML PDF Cited (388) Viewed (24343)

Review
Bacterial autoaggregation
Thomas Trunk,  Hawzeen S. Khalil,  Jack C. Leo
2018, Volume 4, Issue 1: 140-164. doi: 10.3934/microbiol.2018.1.140
Abstract HTML PDF Cited (302) Viewed (23321)
Review
Extracellular polymeric substances, a key element in understanding biofilm phenotype
Patrick Di Martino
2018, Volume 4, Issue 2: 274-288. doi: 10.3934/microbiol.2018.2.274
Abstract HTML PDF Cited (294) Viewed (19397)

Review
Soil bioremediation approaches for petroleum hydrocarbon polluted environments
Eman Koshlaf,  Andrew S Ball
2017, Volume 3, Issue 1: 25-49. doi: 10.3934/microbiol.2017.1.25
Abstract HTML PDF Cited (198) Viewed (22984)
Review
Biofilms: Formation, drug resistance and alternatives to conventional approaches
Ruba Mirghani,  Tania Saba,  Hebba Khaliq,  Jennifer Mitchell,  Lan Do,  Liz Chambi,  Kelly Diaz,  Taylor Kennedy,  Katia Alkassab,  Thuhue Huynh,  Mohamed Elmi,  Jennifer Martinez,  Suad Sawan,  Girdhari Rijal
2022, Volume 8, Issue 3: 239-277. doi: 10.3934/microbiol.2022019
Abstract HTML PDF Cited (178) Viewed (8749)

Review
Chitinase-producing bacteria and their role in biocontrol
Esteban A. Veliz,  Pilar Martínez-Hidalgo,  Ann M. Hirsch
2017, Volume 3, Issue 3: 689-705. doi: 10.3934/microbiol.2017.3.689
Abstract HTML PDF Cited (176) Viewed (15249)
Review
Antibacterial activity of Manuka honey and its components: An overview
Matthew Johnston,  Michael McBride,  Divakar Dahiya,  Richard Owusu-Apenten,  Poonam Singh Nigam
2018, Volume 4, Issue 4: 655-664. doi: 10.3934/microbiol.2018.4.655
Abstract HTML PDF Cited (167) Viewed (21357)

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Special Issues Open For Submission
Applications of Probiotics
Guest Editors: Einar Ringø, Yun-Zhang Sun, Srirengaraj Vijayaram
Deadline: 31 December 2025
Bacterial pathogens and their interactions with human host 2.0
Guest Editors: Sangita Phadtare, PhD
Deadline: 31 August 2025
The Role of Microorganisms in Animal Nutrition and Metabolism
Guest Editors: Uchenna Y. Anele, Ahmed E. Kholif
Deadline: 11 June 2025
Microorganisms diversity in Extreme environments
Guest Editor: Masaharu Tsuji
Deadline: 30 April 2025
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